CheckMProkaryote

CheckMProkaryote

R Documentation

CheckM reference markers for Prokaryotes

Description

List of Universal Single Copy Genes for Bacteria and Archaea.

Usage

data(CheckMProkaryote)

Format

List containing vectors of PFAMs, each vector corresponding to a different set of collocated markers.

References

Parks, Imelfort, Skennerton, Hugenholtz & Tyson (2015). CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Genome Res. 25:1043-1055. (PubMed).

See Also

USiCGs, MGOGs and MGKOs for an alternative set of single copy genes, and for examples on how to generate copy numbers.