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Hadza
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Hadza R Documentation
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Hadza hunter-gatherer gut metagenomes
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Description
~~~~~~~~~~~

Subset of two bins (and the associated contigs and genes) generated by
running SqueezeMeta on two gut metagenomic samples obtained from two
hunter-gatherers of the Hadza ethnic group.

Usage
~~~~~

.. code:: R

   data(Hadza)

Format
~~~~~~

A SQM object; see ``loadSQM``.

Source
~~~~~~

`SRR1927149 <https://www.ncbi.nlm.nih.gov/sra/?term=SRR1927149>`__,
`SRR1929485 <https://www.ncbi.nlm.nih.gov/sra/?term=SRR1929485>`__.

References
~~~~~~~~~~

Rampelli *et al.*, 2015. Metagenome Sequencing of the Hadza
Hunter-Gatherer Gut Microbiota. *Curr. biol.* **25**:1682-93
(`PubMed <https://pubmed.ncbi.nlm.nih.gov/25981789/>`__).

Examples
~~~~~~~~

.. code:: R

   data(Hadza)
   plotTaxonomy(Hadza, "genus", rescale=TRUE)
   plotFunctions(Hadza, "COG")