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CheckMProkaryote
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CheckMProkaryote R Documentation
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CheckM reference markers for Prokaryotes
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Description
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List of Universal Single Copy Genes for Bacteria and Archaea.

Usage
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.. code:: R

   data(CheckMProkaryote)

Format
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List containing vectors of PFAMs, each vector corresponding to a
different set of collocated markers.

References
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Parks, Imelfort, Skennerton, Hugenholtz & Tyson (2015). CheckM:
assessing the quality of microbial genomes recovered from isolates,
single cells, and metagenomes *Genome Res.* **25**:1043-1055.
(`PubMed <https://pubmed.ncbi.nlm.nih.gov/25977477/>`__).

See Also
~~~~~~~~

``USiCGs``, ``MGOGs`` and ``MGKOs`` for an alternative set of single
copy genes, and for examples on how to generate copy numbers.