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CheckMProkaryote
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.. container::

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   CheckMProkaryote R Documentation
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   .. rubric:: CheckM reference markers for Prokaryotes
      :name: CheckMProkaryote

   .. rubric:: Description
      :name: description

   List of Universal Single Copy Genes for Bacteria and Archaea.

   .. rubric:: Usage
      :name: usage

   .. code:: R

      data(CheckMProkaryote)

   .. rubric:: Format
      :name: format

   List containing vectors of PFAMs, each vector corresponding to a
   different set of collocated markers.

   .. rubric:: References
      :name: references

   Parks, Imelfort, Skennerton, Hugenholtz & Tyson (2015). CheckM:
   assessing the quality of microbial genomes recovered from isolates,
   single cells, and metagenomes *Genome Res.* **25**:1043-1055.
   (`PubMed <https://pubmed.ncbi.nlm.nih.gov/25977477/>`__).

   .. rubric:: See Also
      :name: see-also

   ``USiCGs``, ``MGOGs`` and ``MGKOs`` for an alternative set of single
   copy genes, and for examples on how to generate copy numbers.